Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5833
Gene Symbol: PCYT2
PCYT2
0.310 Biomarker disease GENOMICS_ENGLAND We identified five individuals with biallelic PCYT2 variants clinically characterized by global developmental delay with regression, spastic para- or tetraparesis, epilepsy and progressive cerebral and cerebellar atrophy. 31637422 2019
Entrez Id: 162
Gene Symbol: AP1B1
AP1B1
0.300 Biomarker disease GENOMICS_ENGLAND Homozygous Loss-of-Function Mutations in AP1B1, Encoding Beta-1 Subunit of Adaptor-Related Protein Complex 1, Cause MEDNIK-like Syndrome. 31630791 2019
Entrez Id: 10844
Gene Symbol: TUBGCP2
TUBGCP2
0.010 GeneticVariation disease BEFREE Using exome sequencing and family based rare variant analyses, we identified a homozygous variant (c.997C>T [p.Arg333Cys]) in TUBGCP2, encoding gamma-tubulin complex protein 2 (GCP2), in two individuals from a consanguineous family; both individuals presented with microcephaly and developmental delay. 31630790 2019
Entrez Id: 6372
Gene Symbol: CXCL6
CXCL6
0.010 GeneticVariation disease BEFREE Using exome sequencing and family based rare variant analyses, we identified a homozygous variant (c.997C>T [p.Arg333Cys]) in TUBGCP2, encoding gamma-tubulin complex protein 2 (GCP2), in two individuals from a consanguineous family; both individuals presented with microcephaly and developmental delay. 31630790 2019
Entrez Id: 2803
Gene Symbol: GOLGA4
GOLGA4
0.010 GeneticVariation disease BEFREE Using exome sequencing and family based rare variant analyses, we identified a homozygous variant (c.997C>T [p.Arg333Cys]) in TUBGCP2, encoding gamma-tubulin complex protein 2 (GCP2), in two individuals from a consanguineous family; both individuals presented with microcephaly and developmental delay. 31630790 2019
Entrez Id: 2346
Gene Symbol: FOLH1
FOLH1
0.010 GeneticVariation disease BEFREE Using exome sequencing and family based rare variant analyses, we identified a homozygous variant (c.997C>T [p.Arg333Cys]) in TUBGCP2, encoding gamma-tubulin complex protein 2 (GCP2), in two individuals from a consanguineous family; both individuals presented with microcephaly and developmental delay. 31630790 2019
Entrez Id: 2747
Gene Symbol: GLUD2
GLUD2
0.010 GeneticVariation disease BEFREE Delayed cognitive development in humans with GluD2 gene mutations suggests extracerebellar functions of GluD2. 31625608 2020
Entrez Id: 51761
Gene Symbol: ATP8A2
ATP8A2
0.020 GeneticVariation disease BEFREE ATP8A2-related disorders are autosomal recessive conditions that associate encephalopathy with or without hypotonia, psychomotor delay, abnormal movements, chorea, tremor, optic atrophy and cerebellar atrophy (CARMQ4). 31612321 2020
Entrez Id: 9922
Gene Symbol: IQSEC1
IQSEC1
0.300 Biomarker disease GENOMICS_ENGLAND The phenotypic similarity of the affecteds and the functional experiments in flies and mice indicate that IQSEC1 variants are the cause of a recessive disease with intellectual disability, developmental delay, and short stature, and that axonal guidance and dendritic projection defects as well as dendritic spine dysgenesis may underlie disease pathogenesis. 31607425 2019
Entrez Id: 79576
Gene Symbol: NKAP
NKAP
0.300 Biomarker disease GENOMICS_ENGLAND Missense Mutations in NKAP Cause a Disorder of Transcriptional Regulation Characterized by Marfanoid Habitus and Cognitive Impairment. 31587868 2019
Entrez Id: 10059
Gene Symbol: DNM1L
DNM1L
0.110 GeneticVariation disease BEFREE Pathogenic DNM1L mutations cause a mitochondrial disorder with a highly variable clinical phenotype characterized by developmental delay, hypotonia, seizures, microcephaly, poor feeding, ocular abnormalities, and dysarthria. 31587467 2019
Entrez Id: 10297
Gene Symbol: APC2
APC2
0.410 GeneticVariation disease BEFREE Bi-allelic Loss of Human APC2, Encoding Adenomatous Polyposis Coli Protein 2, Leads to Lissencephaly, Subcortical Heterotopia, and Global Developmental Delay. 31585108 2019
Entrez Id: 5354
Gene Symbol: PLP1
PLP1
0.140 GeneticVariation disease BEFREE Pelizaeus-Merzbacher disease (PMD) is an X-linked leukodystrophy caused by mutations in Proteolipid Protein 1 (PLP1), encoding a major myelin protein, resulting in profound developmental delay and early lethality. 31585094 2019
Entrez Id: 7812
Gene Symbol: CSDE1
CSDE1
0.300 Biomarker disease GENOMICS_ENGLAND Disruptive variants of CSDE1 associate with autism and interfere with neuronal development and synaptic transmission. 31579823 2019
Entrez Id: 4191
Gene Symbol: MDH2
MDH2
0.110 GeneticVariation disease BEFREE Recently, bi-allelic mutations in mitochondrial MDH2 were identified in patients with global developmental delay, epilepsy and lactic acidosis. 31538237 2019
Entrez Id: 11152
Gene Symbol: WDR45
WDR45
0.160 GeneticVariation disease BEFREE We report the clinical neurophysiological and neuro-imaging findings of a new subtype of BPAN in a 6 year-old female patient, who was identified to have a large de novo WDR45 deletion who presented in the first year of life with early onset global developmental delay, severe cognitive impairment, generalized hypotonia and a corticosteroid responsive epileptic encephalopathy. 31536831 2020
Entrez Id: 27255
Gene Symbol: CNTN6
CNTN6
0.020 GeneticVariation disease BEFREE The 3p26.3 microduplication involving the CNTN6 gene cause developmental delay and the intellectual disability. 31518906 2019
Entrez Id: 158
Gene Symbol: ADSL
ADSL
0.120 GeneticVariation disease BEFREE Mutations in ADSL can result in inborn errors of metabolism characterized by developmental delay and disorder phenotypes, with no effective treatment options. 31516833 2019
Entrez Id: 196500
Gene Symbol: PIANP
PIANP
0.010 GeneticVariation disease BEFREE A recent case description of a boy with global developmental delay and homozygous nonsense variant in PIANP supports the hypothesis that PIANP is involved in the control of behavioral traits in mammals. 31511635 2019
Entrez Id: 26053
Gene Symbol: AUTS2
AUTS2
0.130 GeneticVariation disease BEFREE An induced pluripotent stem cell (iPSC) line was generated from human urine-derived cells of a 4 year-old boy with autism spectrum disorder(ASD) and developmental delay (DD) carrying a 830 kb de novo deletion at chromosome 7q11.22 disrupting the first exon and promoter region of AUTS2. 31505389 2019
Entrez Id: 10129
Gene Symbol: FRY
FRY
0.010 GeneticVariation disease BEFREE A Novel Homozygous Deletion within the FRY Gene Associated with Nonsyndromic Developmental Delay. 31487712 2019
Entrez Id: 51574
Gene Symbol: LARP7
LARP7
0.110 GeneticVariation disease BEFREE We report a boy with global developmental delay and seizures carrying the de novo MEPCE nonsense variant c.1552 C > T/p.(Arg518*). mRNA and protein analyses identified nonsense-mediated mRNA decay to underlie the decreased amount of MEPCE in patient fibroblasts followed by LARP7 and 7SK snRNA downregulation and HEXIM1 upregulation. 31467394 2019
Entrez Id: 10614
Gene Symbol: HEXIM1
HEXIM1
0.010 GeneticVariation disease BEFREE We report a boy with global developmental delay and seizures carrying the de novo MEPCE nonsense variant c.1552 C > T/p.(Arg518*). mRNA and protein analyses identified nonsense-mediated mRNA decay to underlie the decreased amount of MEPCE in patient fibroblasts followed by LARP7 and 7SK snRNA downregulation and HEXIM1 upregulation. 31467394 2019
Entrez Id: 56257
Gene Symbol: MEPCE
MEPCE
0.010 GeneticVariation disease BEFREE We report a boy with global developmental delay and seizures carrying the de novo MEPCE nonsense variant c.1552 C > T/p.(Arg518*). mRNA and protein analyses identified nonsense-mediated mRNA decay to underlie the decreased amount of MEPCE in patient fibroblasts followed by LARP7 and 7SK snRNA downregulation and HEXIM1 upregulation. 31467394 2019
Entrez Id: 5354
Gene Symbol: PLP1
PLP1
0.140 GeneticVariation disease BEFREE Xq22 deletions that encompass PLP1 (Xq22-PLP1-DEL) are notable for variable expressivity of neurological disease traits in females ranging from a mild late-onset form of spastic paraplegia type 2 (MIM# 312920), sometimes associated with skewed X-inactivation, to an early-onset neurological disease trait (EONDT) of severe developmental delay, intellectual disability, and behavioral abnormalities. 31448840 2020